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lrtm1 leucine-rich repeats and transmembrane domains 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 105947032, updated on 4-Nov-2024

Summary

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Official Symbol
lrtm1provided by Xenbase
Official Full Name
leucine-rich repeats and transmembrane domains 1provided by Xenbase
Primary source
Xenbase:XB-GENE-6461046
See related
Ensembl:ENSXETG00000044760 AllianceGenome:Xenbase:XB-GENE-6461046
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See lrtm1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (149947992..149966361)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683424.1 (290888..314251)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 66 Neighboring gene Wnt family member 5A Neighboring gene calcium channel, voltage-dependent, alpha 2/delta subunit 3 Neighboring gene uncharacterized LOC116410480 Neighboring gene uncharacterized LOC105947034

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
leucine-rich repeat and transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    149947992..149966361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031901263.1 → XP_031757123.1  leucine-rich repeat and transmembrane domain-containing protein 1

    UniProtKB/TrEMBL
    A0A803JQF1, A0A803JQY2
    Related
    ENSXETP00000110400.1, ENSXETT00000110366.1
    Conserved Domains (4) summary
    smart00013
    Location:20 → 53
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:50 → 190
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:32 → 51
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:50 → 110
    LRR_8; Leucine rich repeat
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials