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ptbp2b polypyrimidine tract binding protein 2b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105940308, updated on 20-Aug-2024

Summary

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Gene symbol
ptbp2b
Gene description
polypyrimidine tract binding protein 2b
See related
EnsemblRapid:ENSFHEG00000001320
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
ptbp2
Orthologs
zebrafish all
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Genomic context

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See ptbp2b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) Unplaced Scaffold NW_023397406.1 (414147..429283)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234578.1 (171246..190773)

NW_023397406.1Genomic Context describing neighboring genes Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene dihydropyrimidine dehydrogenase b Neighboring gene chromodomain helicase DNA binding protein 7 Neighboring gene RAB2A, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 2b
Names
Polypyrimidine tract-binding protein 3
polypyrimidine tract binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NW_023397406.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    414147..429283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012882805.3 → XP_012738259.1  polypyrimidine tract-binding protein 2b

    UniProtKB/TrEMBL
    A0A146MKQ9, A0A3Q2Q5W1
    Related
    ENSFHEP00000056313.1, ENSFHET00000064786.1
    Conserved Domains (4) summary
    cd12693
    Location:162 → 257
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12778
    Location:44 → 125
    RRM1_PTBP2; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)
    TIGR01649
    Location:43 → 523
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:319 → 423
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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