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ptbp1b polypyrimidine tract binding protein 1b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105940194, updated on 20-Aug-2024

Summary

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Gene symbol
ptbp1b
Gene description
polypyrimidine tract binding protein 1b
See related
EnsemblRapid:ENSFHEG00000002613
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See ptbp1b in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 9 NC_046369.1 (1399889..1434026)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234574.1 (298703..331088)

Chromosome 9 - NC_046369.1Genomic Context describing neighboring genes Neighboring gene serpin peptidase inhibitor, clade C (antithrombin), member 1 Neighboring gene STIL centriolar assembly protein Neighboring gene ephrin-A2 Neighboring gene uncharacterized LOC118564111 Neighboring gene T-cell acute lymphocytic leukemia protein 1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 1b
Names
Polypyrimidine tract-binding protein 1
Polypyrimidine tract-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046369.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    1399889..1434026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021308680.2 → XP_021164355.2  polypyrimidine tract-binding protein 1b isoform X1

    UniProtKB/TrEMBL
    A0A3Q2NRW8
    Conserved Domains (1) summary
    TIGR01649
    Location:76 → 561
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_012882671.3 → XP_012738125.2  polypyrimidine tract-binding protein 1b isoform X3

    UniProtKB/TrEMBL
    A0A3Q2NRW8
    Related
    ENSFHEP00000001871.2, ENSFHET00000013169.2
    Conserved Domains (1) summary
    TIGR01649
    Location:73 → 558
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  3. XM_036140794.1 → XP_035996687.1  polypyrimidine tract-binding protein 1b isoform X5

    UniProtKB/TrEMBL
    A0A3Q2NRW8
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 511
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  4. XM_036140795.1 → XP_035996688.1  polypyrimidine tract-binding protein 1b isoform X6

    UniProtKB/TrEMBL
    A0A3Q2NRW8
    Related
    ENSFHEP00000046486.1, ENSFHET00000059922.1
    Conserved Domains (1) summary
    TIGR01649
    Location:23 → 508
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  5. XM_036140792.1 → XP_035996685.1  polypyrimidine tract-binding protein 1b isoform X2

    UniProtKB/TrEMBL
    A0A3Q2NRW8
    Conserved Domains (1) summary
    TIGR01649
    Location:75 → 560
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  6. XM_036140793.1 → XP_035996686.1  polypyrimidine tract-binding protein 1b isoform X4

    UniProtKB/TrEMBL
    A0A3Q2NRW8
    Conserved Domains (1) summary
    TIGR01649
    Location:72 → 557
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
Nucleotide Protein
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