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sltm SAFB-like, transcription modulator [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105940007, updated on 20-Aug-2024

Summary

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Gene symbol
sltm
Gene description
SAFB-like, transcription modulator
See related
EnsemblRapid:ENSFHEG00000014764
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See sltm in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 4 NC_046364.1 (30734229..30752914, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234565.1 (48867..66386, complement)

Chromosome 4 - NC_046364.1Genomic Context describing neighboring genes Neighboring gene MINDY lysine 48 deubiquitinase 2 Neighboring gene uncharacterized LOC118562973 Neighboring gene ring finger protein 111 Neighboring gene myosin IEa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SAFB-like transcription modulator
Names
SAFB, transcription modulator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046364.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    30734229..30752914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036136368.1 → XP_035992261.1  SAFB-like transcription modulator isoform X2

    UniProtKB/TrEMBL
    A0A3Q2QQL7
    Related
    ENSFHEP00000029779.2, ENSFHET00000020712.2
    Conserved Domains (4) summary
    smart00513
    Location:13 → 47
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:390 → 698
    PTZ00121; MAEBL; Provisional
    NF033845
    Location:79 → 308
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
    cl17169
    Location:317 → 390
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_036136367.1 → XP_035992260.1  SAFB-like transcription modulator isoform X1

    UniProtKB/TrEMBL
    A0A3Q2QQL7
    Conserved Domains (4) summary
    smart00513
    Location:13 → 47
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:390 → 699
    PTZ00121; MAEBL; Provisional
    NF033845
    Location:79 → 308
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
    cl17169
    Location:317 → 390
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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