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atxn1l ataxin 1-like [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105940004, updated on 20-Aug-2024

Summary

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Gene symbol
atxn1l
Gene description
ataxin 1-like
See related
EnsemblRapid:ENSFHEG00000029472
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
Ataxin-1
Orthologs
human zebrafish all
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Genomic context

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See atxn1l in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 4 NC_046364.1 (30911214..30919289)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234565.1 (217255..229445)

Chromosome 4 - NC_046364.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118562974 Neighboring gene myotubularin related protein 10 Neighboring gene zinc finger protein 821 Neighboring gene adaptor related protein complex 1 subunit gamma 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1-like
Names
Ataxin-1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046364.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    30911214..30919289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012882424.3 → XP_012737878.2  ataxin-1-like

    UniProtKB/TrEMBL
    A0A146ZIF4
    Related
    ENSFHEP00000057627.1, ENSFHET00000039719.1
    Conserved Domains (1) summary
    pfam08517
    Location:522 → 633
    AXH; Ataxin-1 and HBP1 module (AXH)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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