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zfhx3b zinc finger homeobox 3b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105940003, updated on 20-Aug-2024

Summary

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Gene symbol
zfhx3b
Gene description
zinc finger homeobox 3b
See related
EnsemblRapid:ENSFHEG00000013474
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
zfhx3
Orthologs
human zebrafish all
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Genomic context

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See zfhx3b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 4 NC_046364.1 (30097363..30454679)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234565.1 (541938..869004)

Chromosome 4 - NC_046364.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich secretory protein LCCL domain containing 2 Neighboring gene hepatic nuclear factor 4, beta Neighboring gene uncharacterized LOC110366585 Neighboring gene RNA polymerase II subunit M Neighboring gene aldehyde dehydrogenase 1 family, member A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger homeobox protein 3
Names
zinc finger homeobox 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046364.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    30097363..30454679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036136359.1 → XP_035992252.1  zinc finger homeobox protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A146ZIK0
    Conserved Domains (6) summary
    PHA00732
    Location:1345 → 1397
    PHA00732; hypothetical protein
    smart00389
    Location:2305 → 2361
    HOX; Homeodomain
    COG5576
    Location:2741 → 2892
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1678 → 1702
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1533 → 1553
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2799 → 2852
    Homeobox; Homeobox domain

  2. XM_036136362.1 → XP_035992255.1  zinc finger homeobox protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A146ZIK0
    Related
    ENSFHEP00000064546.1, ENSFHET00000045895.1
    Conserved Domains (7) summary
    PHA00732
    Location:1309 → 1361
    PHA00732; hypothetical protein
    smart00389
    Location:2269 → 2325
    HOX; Homeodomain
    COG5022
    Location:1157 → 1443
    COG5022; Myosin heavy chain [General function prediction only]
    COG5576
    Location:2705 → 2856
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1642 → 1666
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1497 → 1517
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2763 → 2816
    Homeobox; Homeobox domain

  3. XM_036136360.1 → XP_035992253.1  zinc finger homeobox protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A146ZIK0
    Conserved Domains (6) summary
    PHA00732
    Location:1345 → 1397
    PHA00732; hypothetical protein
    smart00389
    Location:2305 → 2361
    HOX; Homeodomain
    COG5576
    Location:2741 → 2892
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1678 → 1702
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1533 → 1553
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2799 → 2852
    Homeobox; Homeobox domain

  4. XM_021308543.2 → XP_021164218.2  zinc finger homeobox protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A146ZIK0
    Conserved Domains (6) summary
    PHA00732
    Location:1345 → 1397
    PHA00732; hypothetical protein
    smart00389
    Location:2305 → 2361
    HOX; Homeodomain
    COG5576
    Location:2741 → 2892
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1678 → 1702
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1533 → 1553
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2799 → 2852
    Homeobox; Homeobox domain

  5. XM_036136361.1 → XP_035992254.1  zinc finger homeobox protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A146ZIK0
    Conserved Domains (6) summary
    PHA00732
    Location:1345 → 1397
    PHA00732; hypothetical protein
    smart00389
    Location:2305 → 2361
    HOX; Homeodomain
    COG5576
    Location:2741 → 2892
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1678 → 1702
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1533 → 1553
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2799 → 2852
    Homeobox; Homeobox domain

  6. XM_012882421.3 → XP_012737875.2  zinc finger homeobox protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A146ZIK0
    Related
    ENSFHEP00000011950.2, ENSFHET00000019084.2
    Conserved Domains (6) summary
    PHA00732
    Location:1345 → 1397
    PHA00732; hypothetical protein
    smart00389
    Location:2305 → 2361
    HOX; Homeodomain
    COG5576
    Location:2741 → 2892
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1678 → 1702
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1533 → 1553
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2799 → 2852
    Homeobox; Homeobox domain

  7. XM_012882422.3 → XP_012737876.2  zinc finger homeobox protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A146ZIK0
    Conserved Domains (6) summary
    PHA00732
    Location:1345 → 1397
    PHA00732; hypothetical protein
    smart00389
    Location:2305 → 2361
    HOX; Homeodomain
    COG5576
    Location:2741 → 2892
    COG5576; Homeodomain-containing transcription factor [Transcription]
    sd00017
    Location:1678 → 1702
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:1533 → 1553
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:2799 → 2852
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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