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zbtb16b zinc finger and BTB domain containing 16b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105939758, updated on 20-Aug-2024

Summary

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Gene symbol
zbtb16b
Gene description
zinc finger and BTB domain containing 16b
See related
EnsemblRapid:ENSFHEG00000003322
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
zebrafish all
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Genomic context

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See zbtb16b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 18 NC_046378.1 (27178268..27214325)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234556.1 (241863..277943, complement)

Chromosome 18 - NC_046378.1Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule 1b Neighboring gene neural cell adhesion molecule 1b Neighboring gene transmembrane serine protease 5 Neighboring gene PIH1 domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 16-A
Names
Zinc finger and BTB domain-containing protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046378.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    27178268..27214325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012882052.3 → XP_012737506.2  zinc finger and BTB domain-containing protein 16-A

    UniProtKB/TrEMBL
    A0A3Q2NTZ2
    Related
    ENSFHEP00000002525.2, ENSFHET00000012084.2
    Conserved Domains (3) summary
    COG5048
    Location:368 → 587
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:513 → 533
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:11 → 117
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases