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LOC105939493 oocyte zinc finger protein XlCOF6.1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105939493, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105939493
Gene description
oocyte zinc finger protein XlCOF6.1
See related
EnsemblRapid:ENSFHEG00000030531
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105939493 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 10 NC_046370.1 (19323867..19329914, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234544.1 (938212..944396)

Chromosome 10 - NC_046370.1Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene gastrula zinc finger protein XlCGF26.1 Neighboring gene oocyte zinc finger protein XlCOF20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF6.1
Names
Zinc finger and SCAN domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046370.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    19323867..19329914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012881702.3 → XP_012737156.2  oocyte zinc finger protein XlCOF6.1

    Related
    ENSFHEP00000035578.1, ENSFHET00000063536.1
    Conserved Domains (6) summary
    COG5048
    Location:252 → 382
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:104 → 272
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:200 → 220
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:148 → 164
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:392 → 414
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:212 → 235
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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