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LOC105939490 zinc finger protein 771 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105939490, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105939490
Gene description
zinc finger protein 771
See related
EnsemblRapid:ENSFHEG00000029300 EnsemblRapid:ENSFHEG00000029855
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105939490 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 10 NC_046370.1 (19545033..19567595, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234544.1 (711873..717675)

Chromosome 10 - NC_046370.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein OZF Neighboring gene tripartite motif-containing protein 16-like Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene gastrula zinc finger protein XlCGF26.1 Neighboring gene zinc finger protein OZF Neighboring gene gastrula zinc finger protein XlCGF28.1-like Neighboring gene NPL4 homolog, ubiquitin recognition factor Neighboring gene uncharacterized LOC110366537

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 2; zinc finger protein 658; zinc finger protein 771

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046370.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    19545033..19567595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036142235.1 → XP_035998128.1  zinc finger protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A3Q2PFR8
    Conserved Domains (4) summary
    PHA03307
    Location:42 → 196
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5048
    Location:172 → 326
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:202 → 222
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:214 → 238
    zf-H2C2_2; Zinc-finger double domain

  2. XM_036142232.1 → XP_035998125.1  zinc finger protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2PFR8
    Conserved Domains (4) summary
    PHA03307
    Location:78 → 232
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5048
    Location:208 → 362
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 258
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:250 → 274
    zf-H2C2_2; Zinc-finger double domain

  3. XM_036142231.1 → XP_035998124.1  zinc finger protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2PFR8
    Conserved Domains (4) summary
    PHA03307
    Location:78 → 232
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5048
    Location:208 → 362
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 258
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:250 → 274
    zf-H2C2_2; Zinc-finger double domain

  4. XM_036142233.1 → XP_035998126.1  zinc finger protein 658 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2PFR0
    Related
    ENSFHEP00000043498.1, ENSFHET00000038604.1
    Conserved Domains (5) summary
    PHA03307
    Location:78 → 232
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5048
    Location:262 → 406
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 258
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:236 → 258
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:250 → 274
    zf-H2C2_2; Zinc-finger double domain

  5. XM_036142236.1 → XP_035998129.1  zinc finger protein 771 isoform X5

    UniProtKB/TrEMBL
    A0A3Q2PFT0
    Related
    ENSFHEP00000061471.1, ENSFHET00000041255.1
    Conserved Domains (5) summary
    PHA02664
    Location:94 → 193
    PHA02664; hypothetical protein; Provisional
    COG5048
    Location:240 → 384
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:216 → 236
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:214 → 236
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:228 → 252
    zf-H2C2_2; Zinc-finger double domain

  6. XM_036142234.1 → XP_035998127.1  zinc finger protein 771 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2PFR0
    Conserved Domains (5) summary
    PHA02664
    Location:116 → 215
    PHA02664; hypothetical protein; Provisional
    COG5048
    Location:262 → 406
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 258
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:236 → 258
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:250 → 274
    zf-H2C2_2; Zinc-finger double domain

  7. XM_012881696.3 → XP_012737150.2  zinc finger protein 771 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2PFR0
    Related
    ENSFHEP00000064367.1, ENSFHET00000049183.1
    Conserved Domains (5) summary
    PHA02664
    Location:116 → 215
    PHA02664; hypothetical protein; Provisional
    COG5048
    Location:262 → 406
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:238 → 258
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:236 → 258
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:250 → 274
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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