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LOC105939485 oocyte zinc finger protein XlCOF20 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105939485, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105939485
Gene description
oocyte zinc finger protein XlCOF20
See related
EnsemblRapid:ENSFHEG00000036296
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105939485 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 10 NC_046370.1 (19343168..19347623, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234544.1 (920869..928299)

Chromosome 10 - NC_046370.1Genomic Context describing neighboring genes Neighboring gene oocyte zinc finger protein XlCOF6.1 Neighboring gene gastrula zinc finger protein XlCGF26.1 Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene gastrula zinc finger protein XlCGF57.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF20
Names
Zinc finger protein 41
Zinc finger protein 619

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046370.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    19343168..19347623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012881685.3 → XP_012737139.2  oocyte zinc finger protein XlCOF20

    Related
    ENSFHEP00000042557.1, ENSFHET00000067366.1
    Conserved Domains (4) summary
    COG5189
    Location:151 → 248
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:204 → 224
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:271 → 294
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:204 → 254
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein
Heading Accession and Version

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