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LOC105939480 gastrula zinc finger protein XlCGF57.1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105939480, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105939480
Gene description
gastrula zinc finger protein XlCGF57.1
See related
EnsemblRapid:ENSFHEG00000031792 EnsemblRapid:ENSFHEG00000036435
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105939480 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 10 NC_046370.1 (19489613..19518820, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234544.1 (745982..752090)

Chromosome 10 - NC_046370.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein OZF Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene tripartite motif-containing protein 16-like Neighboring gene gastrula zinc finger protein XlCGF26.1 Neighboring gene zinc finger protein OZF Neighboring gene zinc finger protein 771 Neighboring gene gastrula zinc finger protein XlCGF28.1-like Neighboring gene NPL4 homolog, ubiquitin recognition factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1; zinc finger protein OZF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046370.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    19489613..19518820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036142214.1 → XP_035998107.1  gastrula zinc finger protein XlCGF57.1 isoform X1

    Conserved Domains (4) summary
    PHA00733
    Location:237 → 286
    PHA00733; hypothetical protein
    COG5048
    Location:320 → 478
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:324 → 344
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:475 → 499
    zf-H2C2_2; Zinc-finger double domain

  2. XM_036142215.1 → XP_035998108.1  gastrula zinc finger protein XlCGF57.1 isoform X1

    Conserved Domains (4) summary
    PHA00733
    Location:237 → 286
    PHA00733; hypothetical protein
    COG5048
    Location:320 → 478
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:324 → 344
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:475 → 499
    zf-H2C2_2; Zinc-finger double domain

  3. XM_036142213.1 → XP_035998106.1  gastrula zinc finger protein XlCGF57.1 isoform X1

    Related
    ENSFHEP00000063145.1, ENSFHET00000060207.1
    Conserved Domains (4) summary
    PHA00733
    Location:237 → 286
    PHA00733; hypothetical protein
    COG5048
    Location:320 → 478
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:324 → 344
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:475 → 499
    zf-H2C2_2; Zinc-finger double domain

  4. XM_036142218.1 → XP_035998111.1  zinc finger protein OZF isoform X2

    Related
    ENSFHEP00000060186.1, ENSFHET00000069245.1
    Conserved Domains (3) summary
    COG5048
    Location:287 → 444
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:290 → 310
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:440 → 465
    zf-H2C2_2; Zinc-finger double domain

  5. XM_036142217.1 → XP_035998110.1  zinc finger protein OZF isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:287 → 444
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:290 → 310
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:440 → 465
    zf-H2C2_2; Zinc-finger double domain

  6. XM_036142216.1 → XP_035998109.1  zinc finger protein OZF isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:287 → 444
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:290 → 310
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:440 → 465
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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