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LOC105939465 gastrula zinc finger protein XlCGF57.1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105939465, updated on 24-Aug-2024

Summary

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Gene symbol
LOC105939465
Gene description
gastrula zinc finger protein XlCGF57.1
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105939465 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 10 NC_046370.1 (19317343..19323289, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234544.1 (944834..953919)

Chromosome 10 - NC_046370.1Genomic Context describing neighboring genes Neighboring gene PH and SEC7 domain-containing protein 1 Neighboring gene gastrula zinc finger protein XlCGF57.1 Neighboring gene oocyte zinc finger protein XlCOF6.1 Neighboring gene gastrula zinc finger protein XlCGF26.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1
Names
Zinc finger protein 749

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046370.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    19317343..19323289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012881632.3 → XP_012737086.2  gastrula zinc finger protein XlCGF57.1

    Conserved Domains (3) summary
    COG5048
    Location:175 → 557
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:554 → 578
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012881631.3 → XP_012737085.2  gastrula zinc finger protein XlCGF57.1

    Conserved Domains (3) summary
    COG5048
    Location:175 → 557
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:403 → 423
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:554 → 578
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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