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LOC105937745 gastrula zinc finger protein XlCGF57.1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105937745, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105937745
Gene description
gastrula zinc finger protein XlCGF57.1
See related
EnsemblRapid:ENSFHEG00000026247
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105937745 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 13 NC_046373.1 (22539013..22547175, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234493.1 (48131..55957, complement)

Chromosome 13 - NC_046373.1Genomic Context describing neighboring genes Neighboring gene oocyte zinc finger protein XlCOF6-like Neighboring gene oocyte zinc finger protein XlCOF6 Neighboring gene oocyte zinc finger protein XlCOF6-like Neighboring gene zinc finger protein 2 Neighboring gene involucrin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1
Names
GDNF-inducible zinc finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046373.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    22539013..22547175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021324900.2 → XP_021180575.2  gastrula zinc finger protein XlCGF57.1

    Related
    ENSFHEP00000052037.1, ENSFHET00000038110.1
    Conserved Domains (3) summary
    COG5048
    Location:178 → 575
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:318 → 338
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:582 → 606
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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