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septin4b septin 4b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105936479, updated on 20-Aug-2024

Summary

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Gene symbol
septin4b
Gene description
septin 4b
See related
EnsemblRapid:ENSFHEG00000037414
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
sept4b; Septin-5
Orthologs
zebrafish all
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Genomic context

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See septin4b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
15
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 18 NC_046378.1 (18517300..18569748, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234454.1 (100337..130890)

Chromosome 18 - NC_046378.1Genomic Context describing neighboring genes Neighboring gene methyltransferase 16, N6-methyladenosine Neighboring gene MAX network transcriptional repressor a Neighboring gene LIM domain kinase 1a Neighboring gene elastin a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin 4b
Names
septin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046378.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    18517300..18569748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036150301.1 → XP_036006194.1  septin 4b isoform X1

    Conserved Domains (1) summary
    pfam00735
    Location:187 → 459
    Septin

  2. XM_036150303.1 → XP_036006196.1  septin 4b isoform X2

    Conserved Domains (1) summary
    pfam00735
    Location:156 → 428
    Septin

  3. XM_036150306.1 → XP_036006199.1  septin 4b isoform X4

    UniProtKB/TrEMBL
    A0A3Q2UPA0
    Related
    ENSFHEP00000035621.1, ENSFHET00000058786.1
    Conserved Domains (1) summary
    pfam00735
    Location:25 → 297
    Septin

  4. XM_036150302.1 → XP_036006195.1  septin 4b isoform X2

    Related
    ENSFHEP00000056157.1, ENSFHET00000068532.1
    Conserved Domains (1) summary
    pfam00735
    Location:156 → 428
    Septin

  5. XM_036150304.1 → XP_036006197.1  septin 4b isoform X3

    Conserved Domains (1) summary
    pfam00735
    Location:45 → 317
    Septin
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases