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cpsf1 cleavage and polyadenylation specific factor 1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105935388, updated on 20-Aug-2024

Summary

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Gene symbol
cpsf1
Gene description
cleavage and polyadenylation specific factor 1
See related
EnsemblRapid:ENSFHEG00000016801
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See cpsf1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
38
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 13 NC_046373.1 (750501..772884)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234423.1 (1221589..1242971, complement)

Chromosome 13 - NC_046373.1Genomic Context describing neighboring genes Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 Neighboring gene poly(ADP-ribose) polymerase family member 10 Neighboring gene aarF domain containing kinase 5 Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 1
Names
Cleavage and polyadenylation specificity factor subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046373.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    750501..772884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021323189.2 → XP_021178864.2  cleavage and polyadenylation specificity factor subunit 1

    UniProtKB/TrEMBL
    A0A146VM01
    Related
    ENSFHEP00000031047.2, ENSFHET00000033062.2
    Conserved Domains (1) summary
    COG5161
    Location:1 → 1471
    SFT1; Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Nucleotide Protein
Heading Accession and Version

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