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LOC105934487 PR domain zinc finger protein 12 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105934487, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105934487
Gene description
PR domain zinc finger protein 12
See related
EnsemblRapid:ENSFHEG00000003944
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
prdm12
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Genomic context

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See LOC105934487 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 8 NC_046368.1 (16126185..16130056, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234403.1 (1402370..1406343)

Chromosome 8 - NC_046368.1Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene uncharacterized LOC105934509 Neighboring gene far upstream element (FUSE) binding protein 3 Neighboring gene argininosuccinate synthase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 12
Names
PR/SET domain 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046368.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    16126185..16130056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012874493.3 → XP_012729947.2  PR domain zinc finger protein 12

    UniProtKB/TrEMBL
    A0A3Q2Q8B9
    Related
    ENSFHEP00000055433.1, ENSFHET00000041599.1
    Conserved Domains (4) summary
    sd00017
    Location:257 → 277
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19196
    Location:86 → 215
    PR-SET_PRDM12; PR-SET domain found in PR domain zinc finger protein 12 (PRDM12) and similar proteins
    pfam00096
    Location:256 → 277
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:269 → 294
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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