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scaper S-phase cyclin A-associated protein in the ER [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105932336, updated on 20-Aug-2024

Summary

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Gene symbol
scaper
Gene description
S-phase cyclin A-associated protein in the ER
See related
EnsemblRapid:ENSFHEG00000002310
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See scaper in Genome Data Viewer
Location:
chromosome: 2
Exon count:
32
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 2 NC_046362.1 (17664417..17753914, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234358.1 (509680..595978)

Chromosome 2 - NC_046362.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 266 Neighboring gene electron transfer flavoprotein subunit alpha Neighboring gene ISL LIM homeobox 2a Neighboring gene proline-serine-threonine phosphatase interacting protein 1a Neighboring gene reticulocalbin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S phase cyclin A-associated protein in the endoplasmic reticulum

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046362.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    17664417..17753914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021320944.2 → XP_021176619.2  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1

    UniProtKB/TrEMBL
    A0A3Q2NR39
    Related
    ENSFHEP00000045987.1, ENSFHET00000044975.1
    Conserved Domains (3) summary
    PTZ00121
    Location:629 → 977
    PTZ00121; MAEBL; Provisional
    PRK10263
    Location:232 → 569
    PRK10263; DNA translocase FtsK; Provisional
    pfam16501
    Location:144 → 241
    SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum

  2. XM_021320945.2 → XP_021176620.2  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X2

    UniProtKB/TrEMBL
    A0A3Q2NR39
    Related
    ENSFHEP00000001554.2, ENSFHET00000013674.2
    Conserved Domains (4) summary
    PTZ00121
    Location:604 → 952
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:205 → 417
    PHA03247; large tegument protein UL36; Provisional
    COG0419
    Location:478 → 721
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    pfam16501
    Location:144 → 241
    SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum

  3. XM_036149795.1 → XP_036005688.1  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X4

    UniProtKB/TrEMBL
    A0A3Q2TYQ1
    Related
    ENSFHEP00000001530.2, ENSFHET00000013723.2
    Conserved Domains (3) summary
    PTZ00121
    Location:511 → 859
    PTZ00121; MAEBL; Provisional
    pfam16501
    Location:144 → 241
    SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
    NF033875
    Location:289 → 451
    Agg_substance; LPXTG-anchored aggregation substance

  4. XM_036149785.1 → XP_036005678.1  S phase cyclin A-associated protein in the endoplasmic reticulum isoform X3

    UniProtKB/TrEMBL
    A0A3Q2SQI9
    Related
    ENSFHEP00000001538.2, ENSFHET00000013706.2
    Conserved Domains (3) summary
    PTZ00121
    Location:592 → 940
    PTZ00121; MAEBL; Provisional
    PRK10263
    Location:195 → 532
    PRK10263; DNA translocase FtsK; Provisional
    pfam16501
    Location:107 → 204
    SCAPER_N; S phase cyclin A-associated protein in the endoplasmic reticulum
Nucleotide Protein
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