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zeb1b zinc finger E-box binding homeobox 1b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105932169, updated on 20-Aug-2024

Summary

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Gene symbol
zeb1b
Gene description
zinc finger E-box binding homeobox 1b
See related
EnsemblRapid:ENSFHEG00000007706
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
zeb1
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Genomic context

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See zeb1b in Genome Data Viewer
Location:
chromosome: 21
Exon count:
8
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 21 NC_046381.1 (28940750..29000336, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234354.1 (1212518..1271256, complement)

Chromosome 21 - NC_046381.1Genomic Context describing neighboring genes Neighboring gene kinesin-1 heavy chain-like Neighboring gene Rho GTPase activating protein 12b Neighboring gene supervillin a Neighboring gene E3 ubiquitin-protein ligase TRIM21-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046381.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    28940750..29000336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012871198.3 → XP_012726652.2  LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 1

    UniProtKB/TrEMBL
    A0A3Q2P3J3
    Related
    ENSFHEP00000006654.2, ENSFHET00000005135.2
    Conserved Domains (6) summary
    smart00389
    Location:541 → 584
    HOX; Homeodomain
    COG5189
    Location:802 → 908
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:833 → 853
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:205 → 227
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:873 → 898
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:165 → 189
    zf-H2C2_5; C2H2-type zinc-finger domain
Nucleotide Protein
Heading Accession and Version

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