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LOC105932000 B-cell CLL/lymphoma 6 member B protein [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105932000, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105932000
Gene description
B-cell CLL/lymphoma 6 member B protein
See related
EnsemblRapid:ENSFHEG00000037870
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
zebrafish all
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Genomic context

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See LOC105932000 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 16 NC_046376.1 (16970155..16973588, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234352.1 (304394..308324, complement)

Chromosome 16 - NC_046376.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 180-like Neighboring gene zinc finger protein 37 Neighboring gene vac14 homolog (S. cerevisiae) Neighboring gene tripartite motif containing 35-13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-cell CLL/lymphoma 6 member B protein
Names
Zinc finger protein 239

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046376.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    16970155..16973588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021320737.2 → XP_021176412.2  B-cell CLL/lymphoma 6 member B protein isoform X3

    UniProtKB/TrEMBL
    A0A3Q2PLY9
    Conserved Domains (4) summary
    COG5189
    Location:239 → 373
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:357 → 377
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:299 → 321
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:369 → 394
    zf-H2C2_2; Zinc-finger double domain

  2. XM_021320736.2 → XP_021176411.2  B-cell CLL/lymphoma 6 member B protein isoform X2

    UniProtKB/TrEMBL
    A0A3Q2PLY9
    Conserved Domains (4) summary
    COG5189
    Location:245 → 379
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:363 → 383
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:305 → 327
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:375 → 400
    zf-H2C2_2; Zinc-finger double domain

  3. XM_012870958.3 → XP_012726412.2  B-cell CLL/lymphoma 6 member B protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q2PLY9
    Related
    ENSFHEP00000038008.1, ENSFHET00000073257.1
    Conserved Domains (4) summary
    COG5189
    Location:253 → 387
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:371 → 391
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:313 → 335
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:383 → 408
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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