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nop56 NOP56 ribonucleoprotein homolog [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105931861, updated on 20-Aug-2024

Summary

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Gene symbol
nop56
Gene description
NOP56 ribonucleoprotein homolog
See related
EnsemblRapid:ENSFHEG00000003342
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See nop56 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 20 NC_046380.1 (32047229..32053240)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234348.1 (1512474..1519060)

Chromosome 20 - NC_046380.1Genomic Context describing neighboring genes Neighboring gene aquaporin 7 Neighboring gene uncharacterized LOC105931853 Neighboring gene motilin-like Neighboring gene small nucleolar RNA SNORA26 Neighboring gene small nucleolar RNA SNORD57 Neighboring gene ubiquitin associated protein 2a Neighboring gene DDB1 and CUL4 associated factor 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar protein 56
Names
Nucleolar NOP5-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046380.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    32047229..32053240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012870740.3 → XP_012726194.1  nucleolar protein 56

    UniProtKB/TrEMBL
    A0A3Q2NTJ1
    Related
    ENSFHEP00000002532.2, ENSFHET00000012069.2
    Conserved Domains (3) summary
    smart00931
    Location:169 → 220
    NOSIC; NOSIC (NUC001) domain
    pfam01798
    Location:175 → 406
    Nop; snoRNA binding domain, fibrillarin
    pfam08156
    Location:5 → 70
    NOP5NT; NOP5NT (NUC127) domain
Nucleotide Protein
Heading Accession and Version

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