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znf384b zinc finger protein 384 b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105931590, updated on 20-Aug-2024

Summary

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Gene symbol
znf384b
Gene description
zinc finger protein 384 b
See related
EnsemblRapid:ENSFHEG00000011373
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
znf384
Orthologs
zebrafish all
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Genomic context

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See znf384b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 3 NC_046363.1 (29369794..29385567)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234344.1 (754192..767065)

Chromosome 3 - NC_046363.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105931544 Neighboring gene PILR alpha associated neural protein Neighboring gene guanine nucleotide binding protein-like 1 Neighboring gene discoidin domain receptor tyrosine kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 384b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046363.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    29369794..29385567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036135155.1 → XP_035991048.1  zinc finger protein 384b isoform X1

    Related
    ENSFHEP00000010089.2, ENSFHET00000016710.2
    Conserved Domains (4) summary
    COG5048
    Location:185 → 382
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:354 → 406
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:316 → 341
    zf-H2C2_2; Zinc-finger double domain

  2. XM_036135157.1 → XP_035991050.1  zinc finger protein 384b isoform X2

    UniProtKB/TrEMBL
    A0A146P6J6
    Related
    ENSFHEP00000010104.1, ENSFHET00000031064.2
    Conserved Domains (2) summary
    COG5048
    Location:280 → 419
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:284 → 304
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_036135159.1 → XP_035991052.1  zinc finger protein 384b isoform X4

    Conserved Domains (2) summary
    COG5048
    Location:231 → 344
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:237 → 257
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_036135158.1 → XP_035991051.1  zinc finger protein 384b isoform X3

    UniProtKB/TrEMBL
    A0A3Q2PBR2
    Conserved Domains (2) summary
    COG5048
    Location:272 → 411
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_036135156.1 → XP_035991049.1  zinc finger protein 384b isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:185 → 382
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:354 → 406
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:316 → 341
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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