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vars1 valyl-tRNA synthetase 1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105931581, updated on 20-Aug-2024

Summary

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Gene symbol
vars1
Gene description
valyl-tRNA synthetase 1
See related
EnsemblRapid:ENSFHEG00000010672
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
vars
Orthologs
human zebrafish all
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Genomic context

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See vars1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
28
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 3 NC_046363.1 (29616913..29641331)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234344.1 (984043..1006968)

Chromosome 3 - NC_046363.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105931583 Neighboring gene INO80 complex subunit E Neighboring gene abhydrolase domain containing 16A, phospholipase Neighboring gene g6f-like Neighboring gene nectin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables valine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in valyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
valine--tRNA ligase
Names
Valine--tRNA ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046363.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    29616913..29641331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012870314.3 → XP_012725768.2  valine--tRNA ligase

    UniProtKB/TrEMBL
    A0A3Q2P9S8
    Related
    ENSFHEP00000009294.2, ENSFHET00000000722.2
    Conserved Domains (2) summary
    PTZ00419
    Location:289 → 1275
    PTZ00419; valyl-tRNA synthetase-like protein; Provisional
    cl02776
    Location:84 → 205
    GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family

  2. XM_036135167.1 → XP_035991060.1  valine--tRNA ligase

    UniProtKB/TrEMBL
    A0A3Q2P9S8
    Related
    ENSFHEP00000027179.2, ENSFHET00000000804.2
    Conserved Domains (2) summary
    PTZ00419
    Location:289 → 1275
    PTZ00419; valyl-tRNA synthetase-like protein; Provisional
    cl02776
    Location:84 → 205
    GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family
Nucleotide Protein
Heading Accession and Version

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