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rps15a ribosomal protein S15a [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105931517, updated on 20-Aug-2024

Summary

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Gene symbol
rps15a
Gene description
ribosomal protein S15a
See related
EnsemblRapid:ENSFHEG00000016172
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See rps15a in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 5 NC_046365.1 (22996073..23002661)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234343.1 (733990..745687, complement)

Chromosome 5 - NC_046365.1Genomic Context describing neighboring genes Neighboring gene coenzyme Q7 homolog, ubiquinone (yeast) Neighboring gene notum pectinacetylesterase 2 Neighboring gene xylosyltransferase I Neighboring gene uncharacterized LOC118563169

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S15a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046365.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    22996073..23002661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012870223.3 → XP_012725677.1  40S ribosomal protein S15a

    UniProtKB/TrEMBL
    A0A3Q2PMQ2
    Related
    ENSFHEP00000014596.1, ENSFHET00000032858.2
    Conserved Domains (1) summary
    PTZ00158
    Location:24 → 153
    PTZ00158; 40S ribosomal protein S15A; Provisional
Nucleotide Protein
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