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zbtb16a zinc finger and BTB domain containing 16a [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105929027, updated on 24-Aug-2024

Summary

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Gene symbol
zbtb16a
Gene description
zinc finger and BTB domain containing 16a
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
zbtb16
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See zbtb16a in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 11 NC_046371.1 (3162554..3489988)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234303.1 (1745300..1945842)

Chromosome 11 - NC_046371.1Genomic Context describing neighboring genes Neighboring gene neural cell adhesion molecule 1a Neighboring gene neural cell adhesion molecule 1-like Neighboring gene 5-hydroxytryptamine (serotonin) receptor 3A Neighboring gene 5-hydroxytryptamine (serotonin) receptor 3B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 16-A
Names
Zinc finger and BTB domain-containing protein 16
zinc finger and BTB domain containing 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046371.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    3162554..3489988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036142739.1 → XP_035998632.1  zinc finger and BTB domain-containing protein 16-A

    UniProtKB/TrEMBL
    A0A3Q2Q0Y4
    Conserved Domains (4) summary
    COG5048
    Location:572 → 732
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:658 → 678
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:572 → 592
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18205
    Location:16 → 122
    BTB_POZ_ZBTB16_PLZF; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 16 (ZBTB16)
Nucleotide Protein
Heading Accession and Version

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