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zbtb21 zinc finger and BTB domain containing 21 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105928106, updated on 20-Aug-2024

Summary

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Gene symbol
zbtb21
Gene description
zinc finger and BTB domain containing 21
See related
EnsemblRapid:ENSFHEG00000029095
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See zbtb21 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 11 NC_046371.1 (35109163..35118426, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234290.1 (1555477..1564787, complement)

Chromosome 11 - NC_046371.1Genomic Context describing neighboring genes Neighboring gene C2 domain-containing protein 2 Neighboring gene autophagy related 101 Neighboring gene uromodulin-like 1 Neighboring gene microtubule-associated protein 6a Neighboring gene monoacylglycerol O-acyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 21
Names
Zinc finger and BTB domain-containing protein 11
Zinc finger and BTB domain-containing protein 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046371.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    35109163..35118426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012865214.3 → XP_012720668.2  zinc finger and BTB domain-containing protein 21

    UniProtKB/TrEMBL
    A0A3Q2PLX2
    Related
    ENSFHEP00000042267.1, ENSFHET00000047118.1
    Conserved Domains (7) summary
    sd00017
    Location:474 → 495
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:642 → 664
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:12 → 123
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam00096
    Location:585 → 607
    zf-C2H2; Zinc finger, C2H2 type
    pfam12874
    Location:986 → 1010
    zf-met; Zinc-finger of C2H2 type
    pfam18450
    Location:664 → 691
    zf_C2H2_6; Zinc Finger domain
    cd20908
    Location:473 → 524
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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