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zbtb18 zinc finger and BTB domain containing 18 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105927947, updated on 20-Aug-2024

Summary

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Gene symbol
zbtb18
Gene description
zinc finger and BTB domain containing 18
See related
EnsemblRapid:ENSFHEG00000026856
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See zbtb18 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 22 NC_046382.1 (31668886..31677727, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234287.1 (1381053..1389695, complement)

Chromosome 22 - NC_046382.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 287 Neighboring gene adenylosuccinate synthase 2 Neighboring gene tumor necrosis factor, alpha-induced protein 3 Neighboring gene SHH signaling and ciliogenesis regulator sdccag8 Neighboring gene uncharacterized LOC118557228

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046382.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    31668886..31677727 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012864965.3 → XP_012720419.2  zinc finger and BTB domain-containing protein 18 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2QYM3
    Related
    ENSFHEP00000038144.1, ENSFHET00000046921.1
    Conserved Domains (4) summary
    COG5048
    Location:311 → 525
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:456 → 476
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 148
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:469 → 491
    zf-H2C2_2; Zinc-finger double domain

  2. XM_021317762.2 → XP_021173437.2  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2QYM3
    Related
    ENSFHEP00000043521.1, ENSFHET00000065089.1
    Conserved Domains (4) summary
    COG5048
    Location:324 → 538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:469 → 489
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:14 → 161
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:482 → 504
    zf-H2C2_2; Zinc-finger double domain

  3. XM_036126821.1 → XP_035982714.1  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2QYM3
    Conserved Domains (4) summary
    COG5048
    Location:324 → 538
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:469 → 489
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:14 → 161
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:482 → 504
    zf-H2C2_2; Zinc-finger double domain

  4. XM_036126822.1 → XP_035982715.1  zinc finger and BTB domain-containing protein 18 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2QYM3
    Related
    ENSFHEP00000064761.1, ENSFHET00000070595.1
    Conserved Domains (4) summary
    COG5048
    Location:311 → 525
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:456 → 476
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 148
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:469 → 491
    zf-H2C2_2; Zinc-finger double domain

  5. XM_012864963.3 → XP_012720417.2  zinc finger and BTB domain-containing protein 18 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2QYM3
    Related
    ENSFHEP00000042539.1, ENSFHET00000062638.1
    Conserved Domains (4) summary
    COG5048
    Location:330 → 544
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:475 → 495
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:20 → 167
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:488 → 510
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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