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gfi1b growth factor independent 1B transcription repressor [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105927422, updated on 20-Aug-2024

Summary

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Gene symbol
gfi1b
Gene description
growth factor independent 1B transcription repressor
See related
EnsemblRapid:ENSFHEG00000015138
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See gfi1b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 8 NC_046368.1 (8395643..8404574, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234280.1 (1448331..1456940, complement)

Chromosome 8 - NC_046368.1Genomic Context describing neighboring genes Neighboring gene bile salt-activated lipase Neighboring gene general transcription factor IIIC, polypeptide 5 Neighboring gene TSC complex subunit 1b Neighboring gene general transcription factor IIIC, polypeptide 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein Gfi-1b
Names
Zinc finger protein Gfi-1b
growth factor independent 1B transcriptional repressor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046368.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    8395643..8404574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012864158.3 → XP_012719612.1  zinc finger protein Gfi-1b

    UniProtKB/TrEMBL
    A0A3Q2PLC6
    Related
    ENSFHEP00000013629.1, ENSFHET00000021217.2
    Conserved Domains (3) summary
    COG5048
    Location:228 → 309
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:220 → 240
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:260 → 285
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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