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LOC105927090 embryonic polyadenylate-binding protein [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105927090, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105927090
Gene description
embryonic polyadenylate-binding protein
See related
EnsemblRapid:ENSFHEG00000003398
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105927090 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 1 NC_046361.1 (25841284..25857792, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224443.1 (126227..142540, complement)

Chromosome 1 - NC_046361.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 12 member 5b Neighboring gene RNA binding motif protein 39b Neighboring gene 14-3-3 protein beta/alpha-1 Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
embryonic polyadenylate-binding protein B; embryonic polyadenylate-binding protein
Names
Polyadenylate-binding 1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046361.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    25841284..25857792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012863702.3 → XP_012719156.1  embryonic polyadenylate-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A3Q2Q7H0, A0A3Q2Q9M3
    Related
    ENSFHEP00000022793.1, ENSFHET00000011963.2
    Conserved Domains (6) summary
    TIGR01628
    Location:11 → 604
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12378
    Location:12 → 91
    RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
    cd12379
    Location:97 → 172
    RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
    cd12380
    Location:190 → 269
    RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
    cd12381
    Location:293 → 370
    RRM4_I_PABPs; RNA recognition motif 4 in type I polyadenylate-binding proteins
    pfam00658
    Location:536 → 603
    PABP; Poly-adenylate binding protein, unique domain

  2. XM_012863695.3 → XP_012719149.1  embryonic polyadenylate-binding protein B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2Q7H5, A0A3Q2Q9M3
    Related
    ENSFHEP00000002578.2, ENSFHET00000011987.2
    Conserved Domains (6) summary
    TIGR01628
    Location:11 → 633
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12378
    Location:12 → 91
    RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
    cd12379
    Location:97 → 168
    RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
    cd12380
    Location:219 → 298
    RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
    cd12381
    Location:322 → 399
    RRM4_I_PABPs; RNA recognition motif 4 in type I polyadenylate-binding proteins
    pfam00658
    Location:565 → 632
    PABP; Poly-adenylate binding protein, unique domain
Nucleotide Protein
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