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znf646 zinc finger protein 646 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105926645, updated on 24-Aug-2024

Summary

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Gene symbol
znf646
Gene description
zinc finger protein 646
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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See znf646 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) Unplaced Scaffold NW_023396890.1 (1100126..1107026, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234271.1 (2523869..2537517, complement)

NW_023396890.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase BRE1B-like Neighboring gene tumor necrosis factor receptor superfamily member 12A Neighboring gene circularly permutated Ras protein 1-like Neighboring gene zinc finger protein 668

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: zinc finger protein 646
Names
Zinc finger protein 729

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NW_023396890.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    1100126..1107026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036132018.1 → XP_035987911.1  LOW QUALITY PROTEIN: zinc finger protein 646

    UniProtKB/TrEMBL
    A0A3Q2R2Q9
    Conserved Domains (3) summary
    PHA00733
    Location:816 → 879
    PHA00733; hypothetical protein
    PHA03291
    Location:266 → 351
    PHA03291; envelope glycoprotein I; Provisional
    sd00017
    Location:1216 → 1236
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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