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wdr43 WD repeat domain 43 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105925623, updated on 20-Aug-2024

Summary

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Gene symbol
wdr43
Gene description
WD repeat domain 43
See related
EnsemblRapid:ENSFHEG00000021863
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See wdr43 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) Unplaced Scaffold NW_023396978.1 (959665..977247, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234258.1 (608253..625715)

NW_023396978.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118561068 Neighboring gene excitatory amino acid transporter 3 Neighboring gene tRNA methyltransferase 61B Neighboring gene speedy/RINGO cell cycle regulator family member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NW_023396978.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    959665..977247 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012861573.3 → XP_012717027.2  WD repeat-containing protein 43

    UniProtKB/TrEMBL
    A0A3Q2Q172
    Related
    ENSFHEP00000061163.1, ENSFHET00000073191.1
    Conserved Domains (3) summary
    sd00039
    Location:14 → 52
    7WD40; WD40 repeat [structural motif]
    pfam04003
    Location:460 → 564
    Utp12; Dip2/Utp12 Family
    cl29593
    Location:14 → 286
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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