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prdm5 PR domain containing 5 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105925427, updated on 20-Aug-2024

Summary

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Gene symbol
prdm5
Gene description
PR domain containing 5
See related
EnsemblRapid:ENSFHEG00000013040
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See prdm5 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 9 NC_046369.1 (32175303..32245105)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234255.1 (477917..572120)

Chromosome 9 - NC_046369.1Genomic Context describing neighboring genes Neighboring gene cytoplasmic polyadenylation element binding protein 2 Neighboring gene neuron-derived neurotrophic factor Neighboring gene uncharacterized LOC110368447 Neighboring gene chymotrypsin-like elastase family member 3B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 5
Names
PR/SET domain 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046369.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    32175303..32245105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012861276.3 → XP_012716730.1  PR domain zinc finger protein 5

    UniProtKB/TrEMBL
    A0A3Q2PF99
    Related
    ENSFHEP00000011581.2, ENSFHET00000018600.2
    Conserved Domains (4) summary
    COG5048
    Location:166 → 592
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:491 → 511
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00856
    Location:22 → 125
    SET; SET domain
    pfam13465
    Location:504 → 527
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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