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bcl6ab BCL6A transcription repressor b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105925293, updated on 20-Aug-2024

Summary

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Gene symbol
bcl6ab
Gene description
BCL6A transcription repressor b
See related
EnsemblRapid:ENSFHEG00000017119
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
zebrafish all
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Genomic context

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See bcl6ab in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 6 NC_046366.1 (4790894..4797568)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234254.1 (499489..506145)

Chromosome 6 - NC_046366.1Genomic Context describing neighboring genes Neighboring gene LRR and PCC domain-containing protein Neighboring gene claudin 1 Neighboring gene cytidylate kinase Neighboring gene family with sequence similarity 78 member Ba

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BCL6A transcription repressor b
Names
B-cell lymphoma 6 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046366.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    4790894..4797568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012861059.3 → XP_012716513.2  BCL6A transcription repressor b

    UniProtKB/TrEMBL
    A0A3Q2QVW5
    Conserved Domains (4) summary
    COG5048
    Location:472 → 536
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:476 → 496
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:8 → 125
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:488 → 513
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012861060.3 → XP_012716514.2  BCL6A transcription repressor b

    UniProtKB/TrEMBL
    A0A3Q2QVW5
    Related
    ENSFHEP00000031307.2, ENSFHET00000033216.2
    Conserved Domains (4) summary
    COG5048
    Location:472 → 536
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:476 → 496
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:8 → 125
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:488 → 513
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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