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LOC105923804 gastrula zinc finger protein XlCGF57.1-like [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105923804, updated on 24-Aug-2024

Summary

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Gene symbol
LOC105923804
Gene description
gastrula zinc finger protein XlCGF57.1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105923804 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 24 NC_046384.1 (3900444..3904010)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012226686.1 (3090..5200, complement)

Chromosome 24 - NC_046384.1Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene NACHT, LRR and PYD domains-containing protein 3 Neighboring gene uncharacterized LOC118557887 Neighboring gene NLR family CARD domain-containing protein 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF57.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046384.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    3900444..3904010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036128497.1 → XP_035984390.1  gastrula zinc finger protein XlCGF57.1-like

    Conserved Domains (5) summary
    COG5048
    Location:165 → 416
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:185 → 205
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:101 → 121
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:407 → 429
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:113 → 138
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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