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rpl6 ribosomal protein L6 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105922706, updated on 20-Aug-2024

Summary

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Gene symbol
rpl6
Gene description
ribosomal protein L6
See related
EnsemblRapid:ENSFHEG00000008998
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See rpl6 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 12 NC_046372.1 (12432853..12439066)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012225677.1 (10745..14947)

Chromosome 12 - NC_046372.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118564801 Neighboring gene mitochondrial ribosomal protein L40 Neighboring gene acetyl-CoA acyltransferase 2 Neighboring gene dynein, light chain, LC8-type 1 Neighboring gene polymerase (DNA directed), beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046372.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    12432853..12439066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012858635.3 → XP_012714089.1  60S ribosomal protein L6

    UniProtKB/TrEMBL
    A0A3Q2P6B3
    Related
    ENSFHEP00000007839.1, ENSFHET00000003144.2
    Conserved Domains (3) summary
    COG2163
    Location:111 → 234
    RPL14A; Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]
    cd13156
    Location:107 → 259
    KOW_RPL6; KOW motif of Ribosomal Protein L6
    pfam03868
    Location:14 → 59
    Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain
Nucleotide Protein
Heading Accession and Version

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