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LOC105922213 zinc finger protein 664 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105922213, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105922213
Gene description
zinc finger protein 664
See related
EnsemblRapid:ENSFHEG00000028102 EnsemblRapid:ENSFHEG00000028830
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105922213 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) Unplaced Scaffold NW_023397066.1 (765039..806692, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012225413.1 (46599..53101)

NW_023397066.1Genomic Context describing neighboring genes Neighboring gene immunoglobulin kappa light chain-like Neighboring gene immunoglobulin kappa light chain-like Neighboring gene zinc finger protein 37 homolog Neighboring gene zinc finger protein 182 Neighboring gene oocyte zinc finger protein XlCOF6-like Neighboring gene golgin subfamily A member 6-like protein 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF22; zinc finger and SCAN domain-containing protein 31; zinc finger protein 135; zinc finger protein 664; zinc finger protein 813
Names
Histone-lysine N-methyltransferase PRDM9
Zinc finger and SCAN domain-containing protein 2
Zinc finger protein 22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NW_023397066.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    765039..806692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036133494.1 → XP_035989387.1  zinc finger protein 135 isoform X3

    Conserved Domains (3) summary
    COG5048
    Location:313 → 389
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:289 → 309
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:273 → 298
    zf-H2C2_2; Zinc-finger double domain

  2. XM_036133495.1 → XP_035989388.1  zinc finger protein 813 isoform X5

    Conserved Domains (3) summary
    COG5048
    Location:228 → 304
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:204 → 224
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:188 → 213
    zf-H2C2_2; Zinc-finger double domain

  3. XM_012858104.3 → XP_012713558.2  zinc finger and SCAN domain-containing protein 31 isoform X4

    Related
    ENSFHEP00000047948.1, ENSFHET00000062871.1
    Conserved Domains (3) summary
    COG5048
    Location:302 → 378
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:278 → 298
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:262 → 287
    zf-H2C2_2; Zinc-finger double domain

  4. XM_021313893.2 → XP_021169568.2  zinc finger protein 813 isoform X5

    Conserved Domains (3) summary
    COG5048
    Location:228 → 304
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:204 → 224
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:188 → 213
    zf-H2C2_2; Zinc-finger double domain

  5. XM_036133491.1 → XP_035989384.1  oocyte zinc finger protein XlCOF22 isoform X1

    Related
    ENSFHEP00000058845.1, ENSFHET00000072818.1
    Conserved Domains (6) summary
    COG1196
    Location:5 → 181
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5048
    Location:315 → 463
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:402 → 422
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:260 → 282
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:274 → 299
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:482 → 537
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  6. XM_036133493.1 → XP_035989386.1  zinc finger protein 664 isoform X2

    Conserved Domains (5) summary
    COG5048
    Location:207 → 355
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:294 → 314
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:152 → 174
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:166 → 191
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:374 → 429
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein
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