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si:dkey-89b17.4 zinc finger protein 646 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105920945, updated on 20-Aug-2024

Summary

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Gene symbol
si:dkey-89b17.4
Gene description
zinc finger protein 646
See related
EnsemblRapid:ENSFHEG00000031266
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
zebrafish all
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Genomic context

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See si:dkey-89b17.4 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 16 NC_046376.1 (2332647..2358819, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012225049.1 (87830..97343)

Chromosome 16 - NC_046376.1Genomic Context describing neighboring genes Neighboring gene uncharacterized si:dkeyp-113d7.10 Neighboring gene uncharacterized LOC118566458 Neighboring gene syntaxin 1B Neighboring gene uncharacterized LOC118566461 Neighboring gene THO complex 6 Neighboring gene zinc finger MYM-type protein 1 Neighboring gene mediator complex subunit 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 646
Names
Zinc finger protein 729
Zinc finger protein 91

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046376.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    2332647..2358819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036148646.1 → XP_036004539.1  zinc finger protein 646 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2UMG3
    Related
    ENSFHEP00000044058.1, ENSFHET00000059135.1
    Conserved Domains (4) summary
    sd00017
    Location:1420 → 1440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:1432 → 1456
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:1396 → 1464
    zf-C2H2_8; C2H2-type zinc ribbon
    cd20908
    Location:1451 → 1496
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. XM_036148647.1 → XP_036004540.1  zinc finger protein 646 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2UMG3
    Related
    ENSFHEP00000063126.1, ENSFHET00000038106.1
    Conserved Domains (1) summary
    sd00017
    Location:1126 → 1146
    ZF_C2H2; C2H2 Zn finger [structural motif]

RNA

  1. XR_004933032.1 RNA Sequence

Nucleotide Protein
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