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LOC105920467 zinc finger protein Gfi-1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105920467, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105920467
Gene description
zinc finger protein Gfi-1
See related
EnsemblRapid:ENSFHEG00000000341
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105920467 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 6 NC_046366.1 (4162075..4167483)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224955.1 (127496..133033)

Chromosome 6 - NC_046366.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein Gfi-1-like Neighboring gene uncharacterized LOC118563328 Neighboring gene RNA polymerase II associated protein 2 Neighboring gene glomulin, FKBP associated protein a Neighboring gene cell division cycle 7 homolog (S. cerevisiae)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein Gfi-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046366.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    4162075..4167483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012856065.3 → XP_012711519.2  zinc finger protein Gfi-1 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:228 → 396
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:293 → 313
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_036137888.1 → XP_035993781.1  zinc finger protein Gfi-1 isoform X1

    Conserved Domains (2) summary
    COG5048
    Location:228 → 396
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:293 → 313
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_036137889.1 → XP_035993782.1  zinc finger protein Gfi-1 isoform X2

    Related
    ENSFHEP00000012867.2, ENSFHET00000020258.2
    Conserved Domains (2) summary
    COG5048
    Location:227 → 395
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:292 → 312
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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