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lars1b leucyl-tRNA synthetase 1b [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105919339, updated on 20-Aug-2024

Summary

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Gene symbol
lars1b
Gene description
leucyl-tRNA synthetase 1b
See related
EnsemblRapid:ENSFHEG00000010437
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
lars; lars1
Orthologs
human zebrafish all
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Genomic context

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See lars1b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
32
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 11 NC_046371.1 (13895832..13923736, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224412.1 (629575..656100)

Chromosome 11 - NC_046371.1Genomic Context describing neighboring genes Neighboring gene glutaredoxin domain-containing cysteine-rich protein 2 Neighboring gene PLAC8 like 1 Neighboring gene RNA binding motif protein 27 Neighboring gene POU class 4 homeobox 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables leucine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in leucyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine--tRNA ligase, cytoplasmic
Names
Leucine--tRNA ligase, cytoplasmic
Valine--tRNA ligase, mitochondrial
leucyl-tRNA synthetase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046371.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    13895832..13923736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036142891.1 → XP_035998784.1  leucine--tRNA ligase, cytoplasmic

    UniProtKB/TrEMBL
    A0A3Q2T4A5
    Related
    ENSFHEP00000042315.1, ENSFHET00000049420.1
    Conserved Domains (1) summary
    PLN02959
    Location:5 → 1070
    PLN02959; aminoacyl-tRNA ligase
Nucleotide Protein
Heading Accession and Version

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