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ovol1a ovo-like zinc finger 1a [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105919009, updated on 20-Aug-2024

Summary

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Gene symbol
ovol1a
Gene description
ovo-like zinc finger 1a
See related
EnsemblRapid:ENSFHEG00000030372
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
ovol1
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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See ovol1a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 14 NC_046374.1 (28853114..28874919)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224789.1 (7718..20421)

Chromosome 14 - NC_046374.1Genomic Context describing neighboring genes Neighboring gene N-acylneuraminate cytidylyltransferase-like Neighboring gene N-acylneuraminate cytidylyltransferase Neighboring gene MUS81 structure-specific endonuclease subunit Neighboring gene prostaglandin D2 receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in epidermal cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative transcription factor Ovo-like 1a
Names
Transcription factor Ovo 1-like protein
Transcription factor Ovo 2-like protein
ovo like transcriptional repressor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046374.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    28853114..28874919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036146684.1 → XP_036002577.1  putative transcription factor Ovo-like 1a

    Related
    ENSFHEP00000056295.1, ENSFHET00000042235.1
    Conserved Domains (4) summary
    TIGR01645
    Location:199 → 260
    half-pint; poly-U binding splicing factor, half-pint family
    smart00355
    Location:264 → 286
    ZnF_C2H2; zinc finger
    sd00017
    Location:266 → 286
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:306 → 331
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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