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LOC105918471 zinc finger protein 629 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105918471, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105918471
Gene description
zinc finger protein 629
See related
EnsemblRapid:ENSFHEG00000003856
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105918471 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 13 NC_046373.1 (24016087..24023559, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224720.1 (45843..57481)

Chromosome 13 - NC_046373.1Genomic Context describing neighboring genes Neighboring gene toll-like receptor 13 Neighboring gene semaphorin-6D Neighboring gene zinc finger protein 32 Neighboring gene immunoglobulin kappa variable 6-21-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 629

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046373.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    24016087..24023559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021311133.2 → XP_021166808.2  zinc finger protein 629

    UniProtKB/TrEMBL
    A0A3Q2NVA5
    Conserved Domains (3) summary
    sd00017
    Location:193 → 213
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:252 → 274
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:239 → 262
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012853553.3 → XP_012709007.2  zinc finger protein 629

    UniProtKB/TrEMBL
    A0A3Q2NVA5
    Related
    ENSFHEP00000003028.2, ENSFHET00000011231.2
    Conserved Domains (3) summary
    sd00017
    Location:193 → 213
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:252 → 274
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:239 → 262
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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