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zfhx2 zinc finger homeobox 2 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105918321, updated on 20-Aug-2024

Summary

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Gene symbol
zfhx2
Gene description
zinc finger homeobox 2
See related
EnsemblRapid:ENSFHEG00000007223
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
zebrafish all
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Genomic context

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See zfhx2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 21 NC_046381.1 (36890059..36908193, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224707.1 (67613..85885)

Chromosome 21 - NC_046381.1Genomic Context describing neighboring genes Neighboring gene polyadenylate-binding protein 2-like Neighboring gene neuroguidin, EIF4E binding protein Neighboring gene poly(A) binding protein, nuclear 1 Neighboring gene thiamine triphosphatase Neighboring gene ddb1 and cul4 associated factor 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger homeobox protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046381.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    36890059..36908193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012853380.3 → XP_012708834.2  zinc finger homeobox protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2SZA9
    Conserved Domains (4) summary
    smart00389
    Location:1386 → 1442
    HOX; Homeodomain
    sd00020
    Location:1509 → 1531
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:1058 → 1112
    Homeobox; Homeobox domain
    pfam12874
    Location:231 → 255
    zf-met; Zinc-finger of C2H2 type

  2. XM_012853379.3 → XP_012708833.2  zinc finger homeobox protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2SZA9
    Related
    ENSFHEP00000006193.2, ENSFHET00000005903.2
    Conserved Domains (4) summary
    smart00389
    Location:1389 → 1445
    HOX; Homeodomain
    sd00020
    Location:1512 → 1534
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00046
    Location:1061 → 1115
    Homeobox; Homeobox domain
    pfam12874
    Location:234 → 258
    zf-met; Zinc-finger of C2H2 type
Nucleotide Protein
Heading Accession and Version

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