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sall4 spalt-like transcription factor 4 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105918191, updated on 20-Aug-2024

Summary

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Gene symbol
sall4
Gene description
spalt-like transcription factor 4
See related
EnsemblRapid:ENSFHEG00000014187
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See sall4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 1 NC_046361.1 (35894233..35900086)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224406.1 (361326..368576)

Chromosome 1 - NC_046361.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110366954 Neighboring gene zinc finger protein 64 homolog (mouse) Neighboring gene probable phospholipid-transporting ATPase IIA Neighboring gene nuclear factor of activated T-cells, cytoplasmic 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sal-like protein 4
Names
Sal 4-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046361.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    35894233..35900086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012853219.3 → XP_012708673.2  sal-like protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A147B4W2
    Related
    ENSFHEP00000012732.2, ENSFHET00000020074.2
    Conserved Domains (4) summary
    sd00017
    Location:554 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:612 → 634
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:566 → 591
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:354 → 436
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. XM_021310987.2 → XP_021166662.2  sal-like protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A147B4W2
    Related
    ENSFHEP00000064954.1, ENSFHET00000070290.1
    Conserved Domains (4) summary
    sd00017
    Location:535 → 555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:593 → 615
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:547 → 572
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:335 → 417
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein
Heading Accession and Version

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