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nop58 NOP58 ribonucleoprotein homolog (yeast) [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105915467, updated on 20-Aug-2024

Summary

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Gene symbol
nop58
Gene description
NOP58 ribonucleoprotein homolog (yeast)
See related
EnsemblRapid:ENSFHEG00000008065
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Orthologs
human zebrafish all
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Genomic context

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See nop58 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
15
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 24 NC_046384.1 (21373028..21379766)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224525.1 (258440..265710)

Chromosome 24 - NC_046384.1Genomic Context describing neighboring genes Neighboring gene DNA replication fork stabilization factor DONSON Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene small nucleolar RNA SNORD11B Neighboring gene THAP domain-containing protein 6 Neighboring gene WD repeat domain 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar protein 58
Names
Nucleolar protein 58

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046384.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    21373028..21379766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012849578.3 → XP_012705032.2  nucleolar protein 58

    Related
    ENSFHEP00000006937.2, ENSFHET00000004663.2
    Conserved Domains (2) summary
    COG1498
    Location:42 → 402
    SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
    pfam08156
    Location:2 → 52
    NOP5NT; NOP5NT (NUC127) domain
Nucleotide Protein
Heading Accession and Version

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