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pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Clupea harengus (Atlantic herring) ]

Gene ID: 105913210, updated on 18-Jun-2024

Summary

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Gene symbol
pomgnt1
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
See related
Ensembl:ENSCHAG00020025612
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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See pomgnt1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 10 NC_045161.1 (2265575..2281446, complement)

Chromosome 10 - NC_045161.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 3-kinase regulatory subunit alpha-like Neighboring gene tetraspanin-1 Neighboring gene uncharacterized LOC105913165 Neighboring gene KN motif and ankyrin repeat domains 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045161.1 Chromosome 10 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045161.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    2265575..2281446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031574967.2 → XP_031430827.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A6P8G6A8
    Related
    ENSCHAP00020058933.1, ENSCHAT00020063410.1
    Conserved Domains (2) summary
    cd02514
    Location:296 → 623
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:94 → 241
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

  2. XM_031574965.2 → XP_031430825.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A6P8G6A8
    Related
    ENSCHAP00020058938.1, ENSCHAT00020063417.1
    Conserved Domains (2) summary
    cd02514
    Location:296 → 623
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:94 → 241
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
Nucleotide Protein
Heading Accession and Version

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