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fut8b fucosyltransferase 8b (alpha (1,6) fucosyltransferase) [ Clupea harengus (Atlantic herring) ]

Gene ID: 105907253, updated on 18-Jun-2024

Summary

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Gene symbol
fut8b
Gene description
fucosyltransferase 8b (alpha (1,6) fucosyltransferase)
See related
Ensembl:ENSCHAG00020014411
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
fut8
Orthologs
zebrafish all
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Genomic context

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See fut8b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 15 NC_045166.1 (17982337..18083632)

Chromosome 15 - NC_045166.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122133534 Neighboring gene uncharacterized LOC116223849 Neighboring gene gephyrin b Neighboring gene protein associated with LIN7 1, MAGUK p55 family member b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045166.1 Chromosome 15 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein 6-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-(1,6)-fucosyltransferase
Names
fucosyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045166.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    17982337..18083632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012835543.3 → XP_012690997.1  alpha-(1,6)-fucosyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A6P3W7Z8
    Related
    ENSCHAP00020032245.1, ENSCHAT00020034504.1
    Conserved Domains (3) summary
    cd11300
    Location:175 → 500
    Fut8_like; Alpha 1-6-fucosyltransferase
    cd11792
    Location:507 → 561
    SH3_Fut8; Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)
    pfam15619
    Location:44 → 121
    Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

  2. XM_031581304.2 → XP_031437164.1  alpha-(1,6)-fucosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A6P8GCZ2
    Conserved Domains (3) summary
    cd11300
    Location:176 → 501
    Fut8_like; Alpha 1-6-fucosyltransferase
    cd11792
    Location:508 → 562
    SH3_Fut8; Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)
    pfam01486
    Location:37 → 122
    K-box; K-box region

  3. XM_031581307.2 → XP_031437167.1  alpha-(1,6)-fucosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A6P8GCZ2
    Related
    ENSCHAP00020032248.1, ENSCHAT00020034507.1
    Conserved Domains (3) summary
    cd11300
    Location:176 → 501
    Fut8_like; Alpha 1-6-fucosyltransferase
    cd11792
    Location:508 → 562
    SH3_Fut8; Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)
    pfam01486
    Location:37 → 122
    K-box; K-box region

  4. XM_031581306.2 → XP_031437166.1  alpha-(1,6)-fucosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A6P8GCZ2
    Conserved Domains (3) summary
    cd11300
    Location:176 → 501
    Fut8_like; Alpha 1-6-fucosyltransferase
    cd11792
    Location:508 → 562
    SH3_Fut8; Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)
    pfam01486
    Location:37 → 122
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version

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