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ano5b anoctamin 5b [ Clupea harengus (Atlantic herring) ]

Gene ID: 105907208, updated on 18-Jun-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
See related
Ensembl:ENSCHAG00020015234
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: 20
Exon count:
23
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 20 NC_045171.1 (20664608..20723575, complement)

Chromosome 20 - NC_045171.1Genomic Context describing neighboring genes Neighboring gene phospholipase A and acyltransferase 4-like Neighboring gene zinc transporter ZIP13-like Neighboring gene solute carrier family 17 member 6b Neighboring gene uncharacterized LOC116225146 Neighboring gene cap methyltransferase 2 Neighboring gene calretinin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045171.1 Chromosome 20 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045171.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    20664608..20723575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031586882.2 → XP_031442742.1  anoctamin-5b isoform X1

    UniProtKB/TrEMBL
    A0A6P8H4Z3
    Related
    ENSCHAP00020034482.1, ENSCHAT00020036848.1
    Conserved Domains (2) summary
    pfam04547
    Location:280 → 864
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:60 → 277
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_031586884.2 → XP_031442744.1  anoctamin-5b isoform X2

    UniProtKB/TrEMBL
    A0A6P8GU98
    Related
    ENSCHAP00020034483.1, ENSCHAT00020036849.1
    Conserved Domains (2) summary
    pfam04547
    Location:273 → 857
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:53 → 270
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

RNA

  1. XR_006153012.1 RNA Sequence

    Related
    ENSCHAT00020036793.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases