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zbtb44 zinc finger and BTB domain containing 44 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105906627, updated on 18-Jun-2024

Summary

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Gene symbol
zbtb44
Gene description
zinc finger and BTB domain containing 44
See related
Ensembl:ENSCHAG00020027177
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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See zbtb44 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 8 NC_045159.1 (24996395..25009531)

Chromosome 8 - NC_045159.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 15a Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 8a Neighboring gene translocase of inner mitochondrial membrane 8 homolog B (yeast) Neighboring gene succinate dehydrogenase complex, subunit D, integral membrane protein a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045159.1 Chromosome 8 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 44

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045159.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    24996395..25009531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012834811.3 → XP_012690265.1  zinc finger and BTB domain-containing protein 44 isoform X1

    UniProtKB/TrEMBL
    A0A6P3W5P2
    Conserved Domains (5) summary
    COG5048
    Location:332 → 540
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:509 → 531
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:13 → 135
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:433 → 458
    zf-H2C2_2; Zinc-finger double domain

  2. XM_031572469.2 → XP_031428329.1  zinc finger and BTB domain-containing protein 44 isoform X2

    UniProtKB/TrEMBL
    A0A6P8FPM6
    Related
    ENSCHAP00020061576.1, ENSCHAT00020066822.1
    Conserved Domains (4) summary
    COG5189
    Location:321 → 469
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl38908
    Location:13 → 135
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:433 → 458
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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