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ano5a anoctamin 5a [ Clupea harengus (Atlantic herring) ]

Gene ID: 105905152, updated on 18-Jun-2024

Summary

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Gene symbol
ano5a
Gene description
anoctamin 5a
See related
Ensembl:ENSCHAG00020019702
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Also known as
ano5
Orthologs
human zebrafish all
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Genomic context

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See ano5a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 3 NC_045154.1 (9550502..9584474)

Chromosome 3 - NC_045154.1Genomic Context describing neighboring genes Neighboring gene single immunoglobulin and toll-interleukin 1 receptor (TIR) domain Neighboring gene anoctamin-9 Neighboring gene solute carrier family 17 member 6a Neighboring gene FA complementation group F

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045154.1 Chromosome 3 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5
Names
anoctamin 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045154.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    9550502..9584474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012833145.2 → XP_012688599.2  anoctamin-5 isoform X1

    UniProtKB/TrEMBL
    A0A6P3W378
    Related
    ENSCHAP00020045369.1, ENSCHAT00020048590.1
    Conserved Domains (2) summary
    pfam04547
    Location:275 → 864
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:53 → 272
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_031564502.1 → XP_031420362.1  anoctamin-5 isoform X2

    UniProtKB/TrEMBL
    A0A6P8FB05
    Related
    ENSCHAP00020045297.1, ENSCHAT00020048518.1
    Conserved Domains (2) summary
    pfam04547
    Location:275 → 862
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:53 → 272
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  3. XM_012833146.3 → XP_012688600.2  anoctamin-5 isoform X3

    UniProtKB/TrEMBL
    A0A6P3W3L2
    Related
    ENSCHAP00020045328.1, ENSCHAT00020048549.1
    Conserved Domains (2) summary
    pfam04547
    Location:236 → 825
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:14 → 233
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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