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hs3st1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105894100, updated on 18-Jun-2024

Summary

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Gene symbol
hs3st1
Gene description
heparan sulfate (glucosamine) 3-O-sulfotransferase 1
See related
Ensembl:ENSCHAG00020006025
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
human zebrafish all
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Genomic context

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See hs3st1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 6 NC_045157.1 (4647523..4651180, complement)

Chromosome 6 - NC_045157.1Genomic Context describing neighboring genes Neighboring gene smoothelin-like 1 Neighboring gene cytokine-dependent hematopoietic cell linker Neighboring gene RAB28, member RAS oncogene family Neighboring gene NK3 homeobox 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045157.1 Chromosome 6 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 1
Names
heparan sulfate-glucosamine 3-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045157.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    4647523..4651180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012820573.3 → XP_012676027.2  heparan sulfate glucosamine 3-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A6P3VMF4
    Related
    ENSCHAP00020012312.1, ENSCHAT00020013209.1
    Conserved Domains (1) summary
    pfam00685
    Location:58 → 295
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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