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per2 period circadian clock 2 [ Clupea harengus (Atlantic herring) ]

Gene ID: 105893790, updated on 18-Jun-2024

Summary

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Gene symbol
per2
Gene description
period circadian clock 2
See related
Ensembl:ENSCHAG00020012369
Gene type
protein coding
RefSeq status
MODEL
Organism
Clupea harengus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
Orthologs
zebrafish all
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Genomic context

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See per2 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
24
Annotation release Status Assembly Chr Location
102 current Ch_v2.0.2 (GCF_900700415.2) 22 NC_045173.1 (1384730..1410316)

Chromosome 22 - NC_045173.1Genomic Context describing neighboring genes Neighboring gene COPI coat complex subunit beta 2 Neighboring gene forkhead box L2b Neighboring gene hes family bHLH transcription factor 6 Neighboring gene integral membrane protein 2Cb

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045173.1 Chromosome 22 Reference Ch_v2.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
period circadian protein homolog 2
Names
period circadian regulator 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ch_v2.0.2 Primary Assembly

Genomic

  1. NC_045173.1 Reference Ch_v2.0.2 Primary Assembly

    Range
    1384730..1410316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031559716.1 → XP_031415576.1  period circadian protein homolog 2 isoform X1

    UniProtKB/TrEMBL
    A0A6P8ETM8
    Conserved Domains (3) summary
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:1215 → 1391
    Period_C; Period protein 2/3C-terminal region
    pfam14944
    Location:931 → 1049
    TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

  2. XM_031559724.1 → XP_031415584.1  period circadian protein homolog 2 isoform X8

    UniProtKB/TrEMBL
    A0A6P8ETW8
    Conserved Domains (4) summary
    PHA03247
    Location:936 → 1183
    PHA03247; large tegument protein UL36; Provisional
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:1167 → 1343
    Period_C; Period protein 2/3C-terminal region
    cl00081
    Location:163 → 206
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  3. XM_031559719.1 → XP_031415579.1  period circadian protein homolog 2 isoform X3

    UniProtKB/TrEMBL
    A0A6P8ETW6
    Conserved Domains (3) summary
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:1214 → 1390
    Period_C; Period protein 2/3C-terminal region
    pfam14944
    Location:930 → 1048
    TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

  4. XM_031559718.1 → XP_031415578.1  period circadian protein homolog 2 isoform X2

    UniProtKB/TrEMBL
    A0A6P8EHR1
    Conserved Domains (3) summary
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:1214 → 1390
    Period_C; Period protein 2/3C-terminal region
    pfam14944
    Location:930 → 1048
    TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

  5. XM_031559720.1 → XP_031415580.1  period circadian protein homolog 2 isoform X4

    UniProtKB/TrEMBL
    A0A6P8EUG9
    Related
    ENSCHAP00020027208.1, ENSCHAT00020029341.1
    Conserved Domains (3) summary
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:1211 → 1387
    Period_C; Period protein 2/3C-terminal region
    pfam14944
    Location:927 → 1045
    TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

  6. XM_042703011.1 → XP_042558945.1  period circadian protein homolog 2 isoform X5

    UniProtKB/TrEMBL
    A0A8M1K8X0
    Conserved Domains (2) summary
    PRK10263
    Location:927 → 1031
    PRK10263; DNA translocase FtsK; Provisional
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...

  7. XM_031559722.1 → XP_031415582.1  period circadian protein homolog 2 isoform X6

    UniProtKB/TrEMBL
    A0A6P8EXG1
    Conserved Domains (3) summary
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:1210 → 1386
    Period_C; Period protein 2/3C-terminal region
    pfam14944
    Location:926 → 1044
    TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

  8. XM_031559723.1 → XP_031415583.1  period circadian protein homolog 2 isoform X7

    UniProtKB/TrEMBL
    A0A6P8EHR9
    Conserved Domains (3) summary
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:1209 → 1385
    Period_C; Period protein 2/3C-terminal region
    pfam14944
    Location:925 → 1043
    TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1

  9. XM_031559725.1 → XP_031415585.1  period circadian protein homolog 2 isoform X9

    UniProtKB/TrEMBL
    A0A6P8EUH5
    Related
    ENSCHAP00020027191.1, ENSCHAT00020029322.1
    Conserved Domains (4) summary
    PHA03247
    Location:930 → 1177
    PHA03247; large tegument protein UL36; Provisional
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:1161 → 1337
    Period_C; Period protein 2/3C-terminal region
    cl00081
    Location:163 → 206
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  10. XM_031559717.1 → XP_031415577.1  period circadian protein homolog 2 isoform X1

    UniProtKB/TrEMBL
    A0A6P8ETM8
    Conserved Domains (3) summary
    cd00130
    Location:379 → 479
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam12114
    Location:1215 → 1391
    Period_C; Period protein 2/3C-terminal region
    pfam14944
    Location:931 → 1049
    TCRP1; Tongue Cancer Chemotherapy Resistant Protein 1
Nucleotide Protein
Heading Accession and Version

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